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RNA-seq in practice: Hands-on workshop on RCAC systems
RNA-seq in practice: Hands-on workshop on RCAC systems
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RNA-seq in practice: Hands-on workshop on RCAC systems
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EPISODES
Summary and Schedule
1. Introduction to RNA-seq
2. Downloading and organizing files
3. Quality control of RNA-seq reads
4. A. Genome-based quantification (STAR + featureCounts)
5. B. Transcript-based quantification (Kallisto)
6. Gene-level QC and differential expression (DESeq2)
7. B. Differential expression using DESeq2 (Kallisto pathway)
8. Gene set enrichment analysis
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Introduction to RNA-seqWhere are we heading towards in this workshop?
Downloading and organizing files
Quality control of RNA-seq reads
A. Genome-based quantification (STAR + featureCounts)
B. Transcript-based quantification (Kallisto)
Gene-level QC and differential expression (DESeq2)
B. Differential expression using DESeq2 (Kallisto pathway)
Gene set enrichment analysis
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