helixforge utils fetch-db

Download, decompress, and Diamond-format reference protein databases.

Options

Option	Description
`--db`	Database name or local FASTA path.
`--cache-dir`	Cache directory [default: ~/.helixforge/databases].
`--force`	Re-download even if cached. (default: `False`)
`--list`	List available databases and exit. (default: `False`)
`--format-tool`	Formatting tool [default: diamond]. (default: `diamond`)

Examples

  helixforge utils fetch-db --list

  helixforge utils fetch-db --db uniprot_sprot --cache-dir /scratch/dbs

  helixforge utils fetch-db --db /local/proteins.fa --format-tool diamond --force