helixforge utils align

Run miniprot protein-to-genome alignment.

Options

Option	Description
--genome	Reference genome FASTA. (required)
--proteins	Protein FASTA. (required)
--out	Output GFF. (required)
--threads	Number of threads [default: 4]. (default: 4)
--miniprot-bin	miniprot binary [default: miniprot]. (default: miniprot)

Examples

  helixforge utils align --genome genome.fa --proteins uniprot.fa --out miniprot.gff

  helixforge utils align --genome genome.fa --proteins uniprot.fa \
      --out miniprot.gff --threads 16 --miniprot-bin /opt/bin/miniprot