Python API¶

The command line is the primary interface, but the package is importable for scripting.

import bsaseq
from bsaseq import Variant, Window

print(bsaseq.__version__)

Selected modules¶

Module	Contents
`bsaseq.core.models`	`Variant`, `Window` dataclasses
`bsaseq.core.stats`	`calculate_allele_frequency`, `calculate_delta_af`, `calculate_g_statistic`, `tricube_weight`
`bsaseq.io.vcf`	`get_sample_names`, `parse_vcf_to_list`, `write_candidates_vcf`
`bsaseq.analysis.windows`	`calculate_windows`
`bsaseq.analysis.candidates`	`identify_candidate_regions`, `annotate_candidates`
`bsaseq.plotting.genome`	`plot_genome_wide`

Note

The public API is not yet stability-guaranteed across minor versions. Pin a version if you script against these functions.